PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG371600.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 103aa    MW: 11052.2 Da    PI: 8.5371
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG371600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.25.4e-0728691454
                         HHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                  HLH 14 driNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                         d+i + +++L+ llP+ ++++++ + s a +L+ ++ YI+sL
  Pavir.7NG371600.1.p 28 DQISELLSKLQALLPEsQTRNGAHRGSAARVLQDTCSYIRSL 69
                         6899************777999999***************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.2991469IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-42869IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-82873IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.41E-82887IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 103 aa     Download sequence    Send to blast
MSSSRRSRTR RAGSSLSSSS SSRSISEDQI SELLSKLQAL LPESQTRNGA HRGSAARVLQ  60
DTCSYIRSLH QEVDNLSETL AELLSSADVT SDQAAIIRSL LM*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0965983e-99FP096598.1 Phyllostachys edulis cDNA clone: bphyst010g20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004977000.16e-63PREDICTED: transcription factor ILI1
SwissprotA2XY471e-45ILI1_ORYSI; Transcription factor ILI1
SwissprotQ7X7421e-45ILI1_ORYSJ; Transcription factor ILI1
TrEMBLK3YB306e-63K3YB30_SETIT; Uncharacterized protein
STRINGSi011424m2e-62(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122932837
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.11e-18bHLH family protein